3D structure

PDB id
7OYD (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b
Experimental method
ELECTRON MICROSCOPY
Resolution
2.3 Å

Loop

Sequence
CG*UGG
Length
5 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7OYD_124 not in the Motif Atlas
Homologous match to IL_8C3A_115
Geometric discrepancy: 0.1058
The information below is about IL_8C3A_115
Detailed Annotation
Major groove platform
Broad Annotation
Major groove platform
Motif group
IL_48779.2
Basepair signature
cWW-L-cWW
Number of instances in this motif group
16

Unit IDs

7OYD|1|5|C|4457
7OYD|1|5|G|4458
*
7OYD|1|5|U|4530
7OYD|1|5|G|4531
7OYD|1|5|G|4532

Current chains

Chain 5
28S rRNA

Nearby chains

Chain B
uL3
Chain s1
Dap1b

Coloring options:


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