IL_7OYD_126
3D structure
- PDB id
- 7OYD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- CU*AACG
- Length
- 6 nucleotides
- Bulged bases
- 7OYD|1|5|A|4522, 7OYD|1|5|C|4523
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7OYD_126 not in the Motif Atlas
- Geometric match to IL_5TBW_109
- Geometric discrepancy: 0.0903
- The information below is about IL_5TBW_109
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_24807.2
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 16
Unit IDs
7OYD|1|5|C|4462
7OYD|1|5|U|4463
*
7OYD|1|5|A|4521
7OYD|1|5|A|4522
7OYD|1|5|C|4523
7OYD|1|5|G|4524
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain B
- uL3
- Chain O
- RPL13A
- Chain V
- Ribosomal protein L23
- Chain s1
- Dap1b
Coloring options: