IL_7OYD_136

3D structure

PDB id

7OYD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

ACAU(PSU)U*AC(B8T)AU

Length

11 nucleotides

Bulged bases

7OYD|1|5|C|4674

QA status

Modified nucleotides: PSU, B8T

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7OYD|1|5|A|4628
7OYD|1|5|C|4629
7OYD|1|5|A|4630
7OYD|1|5|U|4631
7OYD|1|5|PSU|4632
7OYD|1|5|U|4633
*
7OYD|1|5|A|4673
7OYD|1|5|C|4674
7OYD|1|5|B8T|4675
7OYD|1|5|A|4676
7OYD|1|5|U|4677

Current chains

Chain 5

28S rRNA

Nearby chains

Chain B

uL3

Chain V

Ribosomal protein L23

Chain W

eL24