IL_7OYD_139

3D structure

PDB id

7OYD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

UU*AAUG

Length

6 nucleotides

Bulged bases

7OYD|1|5|A|4660, 7OYD|1|5|U|4661

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OYD_139 not in the Motif Atlas

Homologous match to IL_8C3A_128

Geometric discrepancy: 0.2648

The information below is about IL_8C3A_128

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_24807.2

Basepair signature

cWW-cWW

Number of instances in this motif group

16

Unit IDs

7OYD|1|5|U|4645
7OYD|1|5|U|4646
*
7OYD|1|5|A|4659
7OYD|1|5|A|4660
7OYD|1|5|U|4661
7OYD|1|5|G|4662

Current chains

Chain 5

28S rRNA

Nearby chains

Chain R

60S ribosomal protein L19

Chain d

eL31