IL_7OYD_151

3D structure

PDB id

7OYD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

AGAG*CGAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OYD_151 not in the Motif Atlas

Geometric match to IL_4V9F_100

Geometric discrepancy: 0.1938

The information below is about IL_4V9F_100

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

7OYD|1|5|A|5018
7OYD|1|5|G|5019
7OYD|1|5|A|5020
7OYD|1|5|G|5021
*
7OYD|1|5|C|5036
7OYD|1|5|G|5037
7OYD|1|5|A|5038
7OYD|1|5|U|5039

Current chains

Chain 5

28S rRNA

Nearby chains

Chain II

40S ribosomal protein S8

Chain R

60S ribosomal protein L19

Chain U

RPL22