IL_7OYD_154

3D structure

PDB id

7OYD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

U(A2M)U*GUA

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OYD_154 not in the Motif Atlas

Geometric match to IL_4WF9_047

Geometric discrepancy: 0.1552

The information below is about IL_4WF9_047

Detailed Annotation

Intercalated cWW

Broad Annotation

Intercalated cWW

Motif group

IL_61702.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

6

Unit IDs

7OYD|1|9|U|26
7OYD|1|9|A2M|27
7OYD|1|9|U|28
*
7OYD|1|9|G|646
7OYD|1|9|U|647
7OYD|1|9|A|648

Current chains

Chain 9

18S rRNA

Nearby chains

Chain JJ

Ribosomal protein S9 (Predicted)

Chain XX

RPS23