IL_7OYD_165

3D structure

PDB id

7OYD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

GUACUU*AUGCCGAC

Length

14 nucleotides

Bulged bases

7OYD|1|9|C|142, 7OYD|1|9|U|143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7OYD|1|9|G|130
7OYD|1|9|U|140
7OYD|1|9|A|141
7OYD|1|9|C|142
7OYD|1|9|U|143
7OYD|1|9|U|144
*
7OYD|1|9|A|175
7OYD|1|9|U|176
7OYD|1|9|G|177
7OYD|1|9|C|178
7OYD|1|9|C|179
7OYD|1|9|G|180
7OYD|1|9|A|181
7OYD|1|9|C|182

Current chains

Chain 9

18S rRNA

Nearby chains

Chain GG

40S ribosomal protein S6