IL_7OYD_166

3D structure

PDB id

7OYD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

UGGAUAAC*GCUAAUA(OMC)A

Length

17 nucleotides

Bulged bases

7OYD|1|9|U|172

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7OYD|1|9|U|144
7OYD|1|9|G|145
7OYD|1|9|G|146
7OYD|1|9|A|147
7OYD|1|9|U|148
7OYD|1|9|A|149
7OYD|1|9|A|150
7OYD|1|9|C|151
*
7OYD|1|9|G|167
7OYD|1|9|C|168
7OYD|1|9|U|169
7OYD|1|9|A|170
7OYD|1|9|A|171
7OYD|1|9|U|172
7OYD|1|9|A|173
7OYD|1|9|OMC|174
7OYD|1|9|A|175

Current chains

Chain 9

18S rRNA

Nearby chains

Chain GG

40S ribosomal protein S6

Chain YY

40S ribosomal protein S24