IL_7OYD_168

3D structure

PDB id

7OYD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

CUGAC*GGAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OYD_168 not in the Motif Atlas

Geometric match to IL_4V9F_085

Geometric discrepancy: 0.2356

The information below is about IL_4V9F_085

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

7OYD|1|9|C|188
7OYD|1|9|U|189
7OYD|1|9|G|190
7OYD|1|9|A|191
7OYD|1|9|C|192
*
7OYD|1|9|G|207
7OYD|1|9|G|208
7OYD|1|9|A|209
7OYD|1|9|U|210
7OYD|1|9|G|211

Current chains

Chain 9

18S rRNA

Nearby chains

Chain II

40S ribosomal protein S8