IL_7OYD_178

3D structure

PDB id

7OYD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

UUA*UA

Length

5 nucleotides

Bulged bases

7OYD|1|9|U|488

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OYD_178 not in the Motif Atlas

Geometric match to IL_4V88_407

Geometric discrepancy: 0.1027

The information below is about IL_4V88_407

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

7OYD|1|9|U|487
7OYD|1|9|U|488
7OYD|1|9|A|489
*
7OYD|1|9|U|511
7OYD|1|9|A|512

Current chains

Chain 9

18S rRNA

Nearby chains

Chain EE

40S ribosomal protein S4

Chain JJ

Ribosomal protein S9 (Predicted)

Chain YY

40S ribosomal protein S24

Chain v

EEF2