IL_7OYD_182

3D structure

PDB id

7OYD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

GACU*AGGCC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OYD_182 not in the Motif Atlas

Geometric match to IL_1CSL_001

Geometric discrepancy: 0.3789

The information below is about IL_1CSL_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_25872.4

Basepair signature

cWW-cWW-cWH-cWW

Number of instances in this motif group

5

Unit IDs

7OYD|1|9|G|535
7OYD|1|9|A|536
7OYD|1|9|C|537
7OYD|1|9|U|538
*
7OYD|1|9|A|545
7OYD|1|9|G|546
7OYD|1|9|G|547
7OYD|1|9|C|548
7OYD|1|9|C|549

Current chains

Chain 9

18S rRNA

Nearby chains

Chain Ee

40S ribosomal protein S30