IL_7OYD_209
3D structure
- PDB id
- 7OYD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- UGC*GGG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7OYD_209 not in the Motif Atlas
- Geometric match to IL_1YZ9_002
- Geometric discrepancy: 0.1986
- The information below is about IL_1YZ9_002
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_87907.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 179
Unit IDs
7OYD|1|9|U|1101
7OYD|1|9|G|1102
7OYD|1|9|C|1103
*
7OYD|1|9|G|1129
7OYD|1|9|G|1130
7OYD|1|9|G|1131
Current chains
- Chain 9
- 18S rRNA
Nearby chains
- Chain Aa
- RPS26
- Chain BB
- 40S ribosomal protein S3a
- Chain Bb
- 40S ribosomal protein S27
- Chain NN
- uS15
- Chain RR
- 40S ribosomal protein eS17
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