IL_7OYD_212

3D structure

PDB id

7OYD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

GA*UAC

Length

5 nucleotides

Bulged bases

7OYD|1|9|A|1695

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OYD_212 not in the Motif Atlas

Geometric match to IL_4LFB_035

Geometric discrepancy: 0.1299

The information below is about IL_4LFB_035

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

134

Unit IDs

7OYD|1|9|G|1203
7OYD|1|9|A|1204
*
7OYD|1|9|U|1694
7OYD|1|9|A|1695
7OYD|1|9|C|1696

Current chains

Chain 9

18S rRNA

Nearby chains

Chain Aa

RPS26

Chain CC

RPS2