IL_7OYD_215

3D structure

PDB id

7OYD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

CCU*GCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OYD_215 not in the Motif Atlas

Geometric match to IL_4V88_444

Geometric discrepancy: 0.1133

The information below is about IL_4V88_444

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

7OYD|1|9|C|1230
7OYD|1|9|C|1231
7OYD|1|9|U|1232
*
7OYD|1|9|G|1526
7OYD|1|9|C|1527
7OYD|1|9|G|1528

Current chains

Chain 9

18S rRNA

Nearby chains

Chain QQ

Ribosomal protein S16

Chain SS

40S ribosomal protein uS13

Chain TT

RPS19

Chain UU

40S ribosomal protein uS10