IL_7OYD_226

3D structure

PDB id

7OYD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

CUGG*C(5MC)G

Length

7 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OYD_226 not in the Motif Atlas

Geometric match to IL_4V88_455

Geometric discrepancy: 0.3442

The information below is about IL_4V88_455

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

7OYD|1|9|C|1363
7OYD|1|9|U|1364
7OYD|1|9|G|1365
7OYD|1|9|G|1366
*
7OYD|1|9|C|1373
7OYD|1|9|5MC|1374
7OYD|1|9|G|1375

Current chains

Chain 9

18S rRNA

Nearby chains

Chain Aa

RPS26

Chain RR

40S ribosomal protein eS17