3D structure

PDB id
7OYD (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b
Experimental method
ELECTRON MICROSCOPY
Resolution
2.3 Å

Loop

Sequence
ACUAG*CUUCU
Length
10 nucleotides
Bulged bases
7OYD|1|9|C|1403, 7OYD|1|9|U|1404
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7OYD_228 not in the Motif Atlas
Homologous match to IL_8CRE_459
Geometric discrepancy: 0.2
The information below is about IL_8CRE_459
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

7OYD|1|9|A|1402
7OYD|1|9|C|1403
7OYD|1|9|U|1404
7OYD|1|9|A|1405
7OYD|1|9|G|1406
*
7OYD|1|9|C|1440
7OYD|1|9|U|1441
7OYD|1|9|U|1442
7OYD|1|9|C|1443
7OYD|1|9|U|1444

Current chains

Chain 9
18S rRNA

Nearby chains

Chain QQ
Ribosomal protein S16
Chain UU
40S ribosomal protein uS10

Coloring options:


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