IL_7OYD_228
3D structure
- PDB id
- 7OYD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- ACUAG*CUUCU
- Length
- 10 nucleotides
- Bulged bases
- 7OYD|1|9|C|1403, 7OYD|1|9|U|1404
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7OYD_228 not in the Motif Atlas
- Homologous match to IL_8CRE_459
- Geometric discrepancy: 0.2
- The information below is about IL_8CRE_459
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7OYD|1|9|A|1402
7OYD|1|9|C|1403
7OYD|1|9|U|1404
7OYD|1|9|A|1405
7OYD|1|9|G|1406
*
7OYD|1|9|C|1440
7OYD|1|9|U|1441
7OYD|1|9|U|1442
7OYD|1|9|C|1443
7OYD|1|9|U|1444
Current chains
- Chain 9
- 18S rRNA
Nearby chains
- Chain QQ
- Ribosomal protein S16
- Chain UU
- 40S ribosomal protein uS10
Coloring options: