IL_7OYD_241

3D structure

PDB id

7OYD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

GUU*G(M7A)C

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OYD_241 not in the Motif Atlas

Homologous match to IL_8P9A_459

Geometric discrepancy: 0.4223

The information below is about IL_8P9A_459

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

7OYD|1|9|G|1727
7OYD|1|9|U|1728
7OYD|1|9|U|1729
*
7OYD|1|9|G|1805
7OYD|1|9|M7A|1806
7OYD|1|9|C|1807

Current chains

Chain 9

18S rRNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain II

40S ribosomal protein S8

Chain V

Ribosomal protein L23