IL_7OYD_245

3D structure

PDB id

7OYD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

CGGAU*AGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OYD_245 not in the Motif Atlas

Geometric match to IL_2A64_006

Geometric discrepancy: 0.1361

The information below is about IL_2A64_006

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_50730.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

19

Unit IDs

7OYD|1|9|C|1742
7OYD|1|9|G|1743
7OYD|1|9|G|1744
7OYD|1|9|A|1745
7OYD|1|9|U|1746
*
7OYD|1|9|A|1788
7OYD|1|9|G|1789
7OYD|1|9|A|1790
7OYD|1|9|A|1791
7OYD|1|9|G|1792

Current chains

Chain 9

18S rRNA

Nearby chains

Chain GG

40S ribosomal protein S6

Chain II

40S ribosomal protein S8

Chain W

eL24