IL_7OYD_256
3D structure
- PDB id
- 7OYD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- CGAAU*AAAUGUG
- Length
- 12 nucleotides
- Bulged bases
- 7OYD|1|5|G|119, 7OYD|1|5|U|150
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7OYD_256 not in the Motif Atlas
- Geometric match to IL_8GLP_287
- Geometric discrepancy: 0.1073
- The information below is about IL_8GLP_287
- Detailed Annotation
- Kink-turn with embedded cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_65996.1
- Basepair signature
- cWW-L-cWW-L-tSH-R-cWW
- Number of instances in this motif group
- 4
Unit IDs
7OYD|1|5|C|118
7OYD|1|5|G|119
7OYD|1|5|A|120
7OYD|1|5|A|121
7OYD|1|5|U|122
*
7OYD|1|5|A|147
7OYD|1|5|A|148
7OYD|1|5|A|149
7OYD|1|5|U|150
7OYD|1|5|G|151
7OYD|1|5|U|152
7OYD|1|5|G|153
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain G
- RPL7A
- Chain N
- Ribosomal protein L15
- Chain h
- uL29
Coloring options: