IL_7OYD_271

3D structure

PDB id

7OYD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

GA(PSU)*AC

Length

5 nucleotides

Bulged bases

7OYD|1|5|A|4296

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OYD_271 not in the Motif Atlas

Geometric match to IL_8GLP_309

Geometric discrepancy: 0.0724

The information below is about IL_8GLP_309

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

175

Unit IDs

7OYD|1|5|G|4295
7OYD|1|5|A|4296
7OYD|1|5|PSU|4297
*
7OYD|1|5|A|4321
7OYD|1|5|C|4322

Current chains

Chain 5

28S rRNA

Nearby chains

Chain b

60S ribosomal protein L29

Chain o

RPL36A