IL_7OYD_275

3D structure

PDB id

7OYD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

AUC*GU(OMU)

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OYD_275 not in the Motif Atlas

Homologous match to IL_8P9A_343

Geometric discrepancy: 0.1057

The information below is about IL_8P9A_343

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_28037.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

65

Unit IDs

7OYD|1|5|A|4594
7OYD|1|5|U|4595
7OYD|1|5|C|4596
*
7OYD|1|5|G|4622
7OYD|1|5|U|4623
7OYD|1|5|OMU|4624

Current chains

Chain 5

28S rRNA

Nearby chains

Chain B

uL3

Chain V

Ribosomal protein L23