IL_7OYD_280
3D structure
- PDB id
- 7OYD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- GGAUAAC*GCUAAUA(OMC)
- Length
- 15 nucleotides
- Bulged bases
- 7OYD|1|9|U|172
- QA status
- Modified nucleotides: OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7OYD_280 not in the Motif Atlas
- Homologous match to IL_8P9A_383
- Geometric discrepancy: 0.1731
- The information below is about IL_8P9A_383
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_80604.6
- Basepair signature
- cWW-cWW-tWH-tWH-tHW-tHW-cWW
- Number of instances in this motif group
- 3
Unit IDs
7OYD|1|9|G|145
7OYD|1|9|G|146
7OYD|1|9|A|147
7OYD|1|9|U|148
7OYD|1|9|A|149
7OYD|1|9|A|150
7OYD|1|9|C|151
*
7OYD|1|9|G|167
7OYD|1|9|C|168
7OYD|1|9|U|169
7OYD|1|9|A|170
7OYD|1|9|A|171
7OYD|1|9|U|172
7OYD|1|9|A|173
7OYD|1|9|OMC|174
Current chains
- Chain 9
- 18S rRNA
Nearby chains
- Chain GG
- 40S ribosomal protein S6
- Chain YY
- 40S ribosomal protein S24
Coloring options: