IL_7OYD_290
3D structure
- PDB id
- 7OYD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- (4AC)G*CAG
- Length
- 5 nucleotides
- Bulged bases
- 7OYD|1|9|A|1489
- QA status
- Modified nucleotides: 4AC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7OYD_290 not in the Motif Atlas
- Homologous match to IL_8C3A_458
- Geometric discrepancy: 0.1546
- The information below is about IL_8C3A_458
- Detailed Annotation
- Single bulged A
- Broad Annotation
- No text annotation
- Motif group
- IL_31462.3
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 112
Unit IDs
7OYD|1|9|4AC|1337
7OYD|1|9|G|1338
*
7OYD|1|9|C|1488
7OYD|1|9|A|1489
7OYD|1|9|G|1490
Current chains
- Chain 9
- 18S rRNA
Nearby chains
- Chain CC
- RPS2
- Chain DD
- Ribosomal protein S3
- Chain Dd
- uS14
- Chain UU
- 40S ribosomal protein uS10
- Chain w
- SERPINE1 mRNA binding protein 1
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