IL_7OYD_294
3D structure
- PDB id
- 7OYD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- UACGCA*UGAAA
- Length
- 11 nucleotides
- Bulged bases
- 7OYD|1|9|C|65, 7OYD|1|9|C|67
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7OYD_294 not in the Motif Atlas
- Homologous match to IL_8P9A_379
- Geometric discrepancy: 0.2429
- The information below is about IL_8P9A_379
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_21667.2
- Basepair signature
- cWW-tSH-L-R-L-cWW
- Number of instances in this motif group
- 3
Unit IDs
7OYD|1|9|U|63
7OYD|1|9|A|64
7OYD|1|9|C|65
7OYD|1|9|G|66
7OYD|1|9|C|67
7OYD|1|9|A|68
*
7OYD|1|9|U|81
7OYD|1|9|G|82
7OYD|1|9|A|83
7OYD|1|9|A|84
7OYD|1|9|A|85
Current chains
- Chain 9
- 18S rRNA
Nearby chains
- Chain GG
- 40S ribosomal protein S6
- Chain YY
- 40S ribosomal protein S24
Coloring options: