IL_7P2E_050

3D structure

PDB id

7P2E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial ribosome small subunit in complex with IF3, GMPPMP and streptomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

G(B8T)C(5MC)*GUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: B8T, 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7P2E_050 not in the Motif Atlas

Homologous match to IL_5J7L_059

Geometric discrepancy: 0.075

The information below is about IL_5J7L_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.4

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

4

Unit IDs

7P2E|1|A|G|1485
7P2E|1|A|B8T|1486
7P2E|1|A|C|1487
7P2E|1|A|5MC|1488
*
7P2E|1|A|G|1562
7P2E|1|A|U|1563
7P2E|1|A|A|1564
7P2E|1|A|A|1565
7P2E|1|A|C|1566

Current chains

Chain A

12S mitochondrial rRNA

Nearby chains

Chain 3

Aurora kinase A-interacting protein

Chain 8

Translation initiation factor IF-3, mitochondrial