IL_7P3K_012

3D structure

PDB id

7P3K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 70S ribosome stalled with TnaC peptide (control)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

7P3K|1|A|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7P3K_012 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.1364

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

7P3K|1|A|G|147
7P3K|1|A|G|148
7P3K|1|A|A|149
7P3K|1|A|U|150
7P3K|1|A|A|151
7P3K|1|A|A|152
7P3K|1|A|C|153
*
7P3K|1|A|G|168
7P3K|1|A|C|169
7P3K|1|A|U|170
7P3K|1|A|A|171
7P3K|1|A|A|172
7P3K|1|A|U|173
7P3K|1|A|A|174
7P3K|1|A|C|175

Current chains

Chain A

16S rRNA

Nearby chains

Chain T

30S ribosomal protein S20