IL_7P3K_022

3D structure

PDB id

7P3K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 70S ribosome stalled with TnaC peptide (control)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAAGGG*CAUUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7P3K_022 not in the Motif Atlas

Homologous match to IL_5J7L_023

Geometric discrepancy: 0.2402

The information below is about IL_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70801.1

Basepair signature

cWW-cWW-L-R-tWW-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

7P3K|1|A|G|450
7P3K|1|A|A|451
7P3K|1|A|A|452
7P3K|1|A|G|453
7P3K|1|A|G|454
7P3K|1|A|G|455
*
7P3K|1|A|C|477
7P3K|1|A|A|478
7P3K|1|A|U|479
7P3K|1|A|U|480
7P3K|1|A|G|481
7P3K|1|A|A|482
7P3K|1|A|C|483

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

30S ribosomal protein S16