IL_7P3K_109

3D structure

PDB id

7P3K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 70S ribosome stalled with TnaC peptide (control)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCAAC*GGG

Length

8 nucleotides

Bulged bases

7P3K|1|a|G|1332

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7P3K_109 not in the Motif Atlas

Homologous match to IL_5J7L_291

Geometric discrepancy: 0.1492

The information below is about IL_5J7L_291

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.11

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

19

Unit IDs

7P3K|1|a|C|1319
7P3K|1|a|C|1320
7P3K|1|a|A|1321
7P3K|1|a|A|1322
7P3K|1|a|C|1323
*
7P3K|1|a|G|1331
7P3K|1|a|G|1332
7P3K|1|a|G|1333

Current chains

Chain a

23S rRNA

Nearby chains

Chain r

50S ribosomal protein L22

Chain s

50S ribosomal protein L23