IL_7P3K_180

3D structure

PDB id

7P3K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 70S ribosome stalled with TnaC peptide (control)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7P3K_180 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.0856

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

7P3K|1|a|U|1851
7P3K|1|a|U|1852
7P3K|1|a|A|1853
7P3K|1|a|A|1854
7P3K|1|a|U|1855
7P3K|1|a|U|1856
7P3K|1|a|G|1857
7P3K|1|a|A|1858
7P3K|1|a|U|1859
7P3K|1|a|G|1860
*
7P3K|1|a|U|1882
7P3K|1|a|U|1883
7P3K|1|a|G|1884
7P3K|1|a|A|1885
7P3K|1|a|U|1886
7P3K|1|a|C|1887
7P3K|1|a|G|1888
7P3K|1|a|A|1889
7P3K|1|a|A|1890
7P3K|1|a|G|1891

Current chains

Chain a

23S rRNA

Nearby chains