IL_7P48_017

3D structure

PDB id

7P48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus ribosome in complex with Sal(B)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

7P48|1|A|G|846, 7P48|1|A|G|850

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7P48_017 not in the Motif Atlas

Homologous match to IL_5J7L_260

Geometric discrepancy: 0.0951

The information below is about IL_5J7L_260

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

7P48|1|A|G|719
7P48|1|A|A|720
7P48|1|A|A|721
7P48|1|A|A|722
7P48|1|A|C|723
*
7P48|1|A|G|844
7P48|1|A|A|845
7P48|1|A|G|846
7P48|1|A|A|847
7P48|1|A|U|848
7P48|1|A|A|849
7P48|1|A|G|850
7P48|1|A|C|851

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain J

50S ribosomal protein L15