IL_7P48_020

3D structure

PDB id

7P48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus ribosome in complex with Sal(B)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7P48_020 not in the Motif Atlas

Homologous match to IL_5J7L_263

Geometric discrepancy: 0.0806

The information below is about IL_5J7L_263

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_50730.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

19

Unit IDs

7P48|1|A|U|748
7P48|1|A|G|749
7P48|1|A|A|750
7P48|1|A|A|751
7P48|1|A|G|752
*
7P48|1|A|U|769
7P48|1|A|G|770
7P48|1|A|G|771
7P48|1|A|A|772
7P48|1|A|G|773

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2