IL_7P48_032

3D structure

PDB id

7P48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus ribosome in complex with Sal(B)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GCCCCAAAA*UAC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7P48_032 not in the Motif Atlas

Geometric match to IL_4WF9_042

Geometric discrepancy: 0.1628

The information below is about IL_4WF9_042

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.5

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

238

Unit IDs

7P48|1|A|G|1047
7P48|1|A|C|1048
7P48|1|A|C|1049
7P48|1|A|C|1050
7P48|1|A|C|1051
7P48|1|A|A|1052
7P48|1|A|A|1053
7P48|1|A|A|1054
7P48|1|A|A|1055
*
7P48|1|A|U|1194
7P48|1|A|A|1195
7P48|1|A|C|1196

Current chains

Chain A

23S rRNA

Nearby chains

Chain H

50S ribosomal protein L13

Chain O

50S ribosomal protein L20