IL_7P48_039

3D structure

PDB id

7P48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus ribosome in complex with Sal(B)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGUUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

7P48|1|A|U|1249

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7P48_039 not in the Motif Atlas

Homologous match to IL_5J7L_288

Geometric discrepancy: 0.102

The information below is about IL_5J7L_288

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

7P48|1|A|C|1246
7P48|1|A|G|1247
7P48|1|A|U|1248
7P48|1|A|U|1249
7P48|1|A|G|1250
7P48|1|A|A|1251
7P48|1|A|A|1252
7P48|1|A|G|1253
*
7P48|1|A|U|1272
7P48|1|A|G|1273
7P48|1|A|G|1274
7P48|1|A|A|1275
7P48|1|A|G|1276

Current chains

Chain A

23S rRNA

Nearby chains

Chain O

50S ribosomal protein L20