IL_7P48_067
3D structure
- PDB id
- 7P48 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Staphylococcus aureus ribosome in complex with Sal(B)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CGAAAUUCCUUG*CCCG
- Length
- 16 nucleotides
- Bulged bases
- 7P48|1|A|A|1965, 7P48|1|A|U|1971
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7P48_067 not in the Motif Atlas
- Homologous match to IL_4WF9_077
- Geometric discrepancy: 0.0969
- The information below is about IL_4WF9_077
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_84014.2
- Basepair signature
- cWW-L-tHH-cHW-cWW-L-L-tSW-L
- Number of instances in this motif group
- 9
Unit IDs
7P48|1|A|C|1961
7P48|1|A|G|1962
7P48|1|A|A|1963
7P48|1|A|A|1964
7P48|1|A|A|1965
7P48|1|A|U|1966
7P48|1|A|U|1967
7P48|1|A|C|1968
7P48|1|A|C|1969
7P48|1|A|U|1970
7P48|1|A|U|1971
7P48|1|A|G|1972
*
7P48|1|A|C|1988
7P48|1|A|C|1989
7P48|1|A|C|1990
7P48|1|A|G|1991
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 5
- Transfer RNA; tRNA
- Chain 6
- ABC-F type ribosomal protection protein
- Chain C
- 50S ribosomal protein L2
- Chain a
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: