IL_7P48_079

3D structure

PDB id

7P48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus ribosome in complex with Sal(B)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UUA*UG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7P48_079 not in the Motif Atlas

Geometric match to IL_7A0S_085

Geometric discrepancy: 0.1392

The information below is about IL_7A0S_085

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.9

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

44

Unit IDs

7P48|1|A|U|2484
7P48|1|A|U|2485
7P48|1|A|A|2486
*
7P48|1|A|U|2520
7P48|1|A|G|2521

Current chains

Chain A

23S rRNA

Nearby chains

Chain 6

ABC-F type ribosomal protection protein

Chain K

50S ribosomal protein L16