IL_7P48_150

3D structure

PDB id

7P48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus ribosome in complex with Sal(B)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GCAG*CAAAUC

Length

10 nucleotides

Bulged bases

7P48|1|a|A|1267, 7P48|1|a|A|1290, 7P48|1|a|U|1291

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7P48_150 not in the Motif Atlas

Homologous match to IL_4LFB_052

Geometric discrepancy: 0.1845

The information below is about IL_4LFB_052

Detailed Annotation

180 degree turn

Broad Annotation

No text annotation

Motif group

IL_08849.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

7P48|1|a|G|1265
7P48|1|a|C|1266
7P48|1|a|A|1267
7P48|1|a|G|1268
*
7P48|1|a|C|1287
7P48|1|a|A|1288
7P48|1|a|A|1289
7P48|1|a|A|1290
7P48|1|a|U|1291
7P48|1|a|C|1292

Current chains

Chain a

16S rRNA

Nearby chains

Chain c

30S ribosomal protein S3

Chain j

30S ribosomal protein S10

Chain n

30S ribosomal protein S14 type Z