IL_7P7Q_020

3D structure

PDB id

7P7Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. faecalis 70S ribosome bound by PoxtA-EQ2, high-resolution combined volume

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

7P7Q|1|A|G|840, 7P7Q|1|A|G|844

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7P7Q_020 not in the Motif Atlas

Geometric match to IL_7RQB_018

Geometric discrepancy: 0.0633

The information below is about IL_7RQB_018

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.6

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

7P7Q|1|A|G|713
7P7Q|1|A|A|714
7P7Q|1|A|A|715
7P7Q|1|A|A|716
7P7Q|1|A|C|717
*
7P7Q|1|A|G|838
7P7Q|1|A|A|839
7P7Q|1|A|G|840
7P7Q|1|A|A|841
7P7Q|1|A|U|842
7P7Q|1|A|A|843
7P7Q|1|A|G|844
7P7Q|1|A|C|845

Current chains

Chain A

23S rRNA

Nearby chains

Chain I

50S ribosomal protein L4

Chain O

50S ribosomal protein L15