IL_7P7Q_101

3D structure

PDB id

7P7Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. faecalis 70S ribosome bound by PoxtA-EQ2, high-resolution combined volume

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CUC*GCGAG

Length

8 nucleotides

Bulged bases

7P7Q|1|A|G|2589, 7P7Q|1|A|A|2590

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7P7Q_101 not in the Motif Atlas

Geometric match to IL_5J7L_340

Geometric discrepancy: 0.0845

The information below is about IL_5J7L_340

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

7P7Q|1|A|C|2523
7P7Q|1|A|U|2524
7P7Q|1|A|C|2525
*
7P7Q|1|A|G|2587
7P7Q|1|A|C|2588
7P7Q|1|A|G|2589
7P7Q|1|A|A|2590
7P7Q|1|A|G|2591

Current chains

Chain A

23S rRNA

Nearby chains

Chain 4

50S ribosomal protein L32

Chain H

50S ribosomal protein L3