IL_7P7Q_129
3D structure
- PDB id
- 7P7Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. faecalis 70S ribosome bound by PoxtA-EQ2, high-resolution combined volume
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- CAUUAG*CCACGAUG
- Length
- 14 nucleotides
- Bulged bases
- 7P7Q|1|a|U|270, 7P7Q|1|a|C|306
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7P7Q_129 not in the Motif Atlas
- Homologous match to IL_4LFB_011
- Geometric discrepancy: 0.1293
- The information below is about IL_4LFB_011
- Detailed Annotation
- Kink-turn with non-sequential stacking
- Broad Annotation
- Kink-turn
- Motif group
- IL_46174.5
- Basepair signature
- cWW-cSS-tSS-L-cWW-tHW-cWW
- Number of instances in this motif group
- 7
Unit IDs
7P7Q|1|a|C|268
7P7Q|1|a|A|269
7P7Q|1|a|U|270
7P7Q|1|a|U|271
7P7Q|1|a|A|272
7P7Q|1|a|G|273
*
7P7Q|1|a|C|303
7P7Q|1|a|C|304
7P7Q|1|a|A|305
7P7Q|1|a|C|306
7P7Q|1|a|G|307
7P7Q|1|a|A|308
7P7Q|1|a|U|309
7P7Q|1|a|G|310
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain m
- 30S ribosomal protein S12
- Chain r
- 30S ribosomal protein S17
Coloring options: