IL_7P7Q_172

3D structure

PDB id

7P7Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. faecalis 70S ribosome bound by PoxtA-EQ2, high-resolution combined volume

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7P7Q_172 not in the Motif Atlas

Geometric match to IL_4LFB_055

Geometric discrepancy: 0.0826

The information below is about IL_4LFB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57885.3

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

7P7Q|1|a|C|1329
7P7Q|1|a|G|1330
7P7Q|1|a|G|1331
7P7Q|1|a|A|1332
7P7Q|1|a|U|1333
7P7Q|1|a|U|1334
*
7P7Q|1|a|A|1355
7P7Q|1|a|U|1356
7P7Q|1|a|G|1357
7P7Q|1|a|A|1358
7P7Q|1|a|A|1359
7P7Q|1|a|G|1360

Current chains

Chain a

16S rRNA

Nearby chains

Chain n

30S ribosomal protein S13