IL_7P7Q_174

3D structure

PDB id

7P7Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. faecalis 70S ribosome bound by PoxtA-EQ2, high-resolution combined volume

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GCCC*GUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7P7Q_174 not in the Motif Atlas

Geometric match to IL_4V88_464

Geometric discrepancy: 0.0757

The information below is about IL_4V88_464

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.1

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

7P7Q|1|a|G|1427
7P7Q|1|a|C|1428
7P7Q|1|a|C|1429
7P7Q|1|a|C|1430
*
7P7Q|1|a|G|1524
7P7Q|1|a|U|1525
7P7Q|1|a|A|1526
7P7Q|1|a|A|1527
7P7Q|1|a|C|1528

Current chains

Chain a

16S rRNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain D

Transfer RNA; tRNA

Chain b

mRNA