IL_7P7Q_187

3D structure

PDB id

7P7Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. faecalis 70S ribosome bound by PoxtA-EQ2, high-resolution combined volume

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GGAACUCGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7P7Q_187 not in the Motif Atlas

Homologous match to IL_5J7L_386

Geometric discrepancy: 0.0489

The information below is about IL_5J7L_386

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

7P7Q|1|A|G|1708
7P7Q|1|A|G|1709
7P7Q|1|A|A|1710
7P7Q|1|A|A|1711
7P7Q|1|A|C|1712
7P7Q|1|A|U|1713
7P7Q|1|A|C|1714
7P7Q|1|A|G|1715
7P7Q|1|A|G|1716
*
7P7Q|1|A|C|2003
7P7Q|1|A|U|2004
7P7Q|1|A|G|2005
7P7Q|1|A|U|2006
7P7Q|1|A|C|2007

Current chains

Chain A

23S rRNA

Nearby chains

Chain H

50S ribosomal protein L3

Chain N

50S ribosomal protein L14