IL_7P7R_008

3D structure

PDB id

7P7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

PoxtA-EQ2 antibiotic resistance ABCF bound to E. faecalis 70S ribosome, state I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUGAGUAG*CGAAACG

Length

15 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7P7R_008 not in the Motif Atlas

Homologous match to IL_4WF9_009

Geometric discrepancy: 0.0714

The information below is about IL_4WF9_009

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_62167.4

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

16

Unit IDs

7P7R|1|A|C|240
7P7R|1|A|U|241
7P7R|1|A|G|242
7P7R|1|A|A|243
7P7R|1|A|G|244
7P7R|1|A|U|245
7P7R|1|A|A|246
7P7R|1|A|G|247
*
7P7R|1|A|C|255
7P7R|1|A|G|256
7P7R|1|A|A|257
7P7R|1|A|A|258
7P7R|1|A|A|259
7P7R|1|A|C|260
7P7R|1|A|G|261

Current chains

Chain A

23S rRNA

Nearby chains

Chain 7

50S ribosomal protein L35

Chain O

50S ribosomal protein L15