7P7R Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_7P7R_001 | No text annotation | ||
| HL_7P7R_002 | Pseudoknot geometry | ||
| HL_7P7R_003 | No text annotation | ||
| HL_7P7R_004 | GNRA with tandem sheared | ||
| HL_7P7R_005 | No text annotation | ||
| HL_7P7R_006 | No text annotation | ||
| HL_7P7R_007 | No text annotation | ||
| HL_7P7R_008 | No text annotation | ||
| HL_7P7R_009 | T-loop with 2 stacked bulged bases | ||
| HL_7P7R_010 | No text annotation | ||
| HL_7P7R_011 | T-loop with unstacked turn | ||
| HL_7P7R_012 | No text annotation | ||
| HL_7P7R_013 | Pseudoknot geometry | ||
| HL_7P7R_014 | GNRA | ||
| HL_7P7R_015 | GNRA | ||
| HL_7P7R_016 | No text annotation | ||
| HL_7P7R_017 | T-loop with 2 stacked bulged bases | ||
| HL_7P7R_018 | GNRA | ||
| HL_7P7R_019 | GNRA | ||
| HL_7P7R_020 | No text annotation | ||
| HL_7P7R_021 | No text annotation | ||
| HL_7P7R_022 | No text annotation | ||
| HL_7P7R_023 | No text annotation | ||
| HL_7P7R_106 | No text annotation | ||
| HL_7P7R_024 | No text annotation | ||
| HL_7P7R_025 | Mini UNCG | ||
| HL_7P7R_026 | GNRA | ||
| HL_7P7R_027 | No text annotation | ||
| HL_7P7R_028 | No text annotation | ||
| HL_7P7R_029 | GNRA with tandem sheared | ||
| HL_7P7R_030 | UNCG variation | ||
| HL_7P7R_031 | GNRA | ||
| HL_7P7R_032 | No text annotation | ||
| HL_7P7R_033 | No text annotation | ||
| HL_7P7R_034 | GNRA | ||
| HL_7P7R_035 | No text annotation | ||
| HL_7P7R_036 | No text annotation | ||
| HL_7P7R_037 | Pseudoknot geometry with 3' bulge | ||
| HL_7P7R_038 | No text annotation | ||
| HL_7P7R_039 | Mini UNCG | ||
| HL_7P7R_040 | No text annotation | ||
| HL_7P7R_041 | GNRA | ||
| HL_7P7R_042 | No text annotation | ||
| HL_7P7R_043 | No text annotation | ||
| HL_7P7R_044 | No text annotation | ||
| HL_7P7R_045 | No text annotation | ||
| HL_7P7R_046 | GNRA related | ||
| HL_7P7R_047 | No text annotation | ||
| HL_7P7R_048 | No text annotation | ||
| HL_7P7R_049 | No text annotation | ||
| HL_7P7R_050 | No text annotation | ||
| HL_7P7R_051 | UNCG | ||
| HL_7P7R_052 | No text annotation | ||
| HL_7P7R_053 | LSU P loop | ||
| HL_7P7R_054 | No text annotation | ||
| HL_7P7R_055 | No text annotation | ||
| HL_7P7R_107 | No text annotation | ||
| HL_7P7R_056 | Pseudoknot geometry | ||
| HL_7P7R_057 | GNRA with extra cWW | ||
| HL_7P7R_058 | GNRA | ||
| HL_7P7R_059 | No text annotation | ||
| HL_7P7R_060 | No text annotation | ||
| HL_7P7R_061 | GNRA variation | ||
| HL_7P7R_062 | LSU A loop | ||
| HL_7P7R_063 | GNRA | ||
| HL_7P7R_064 | GNRA | ||
| HL_7P7R_065 | Ribsomal LSU H95 | ||
| HL_7P7R_066 | No text annotation | ||
| HL_7P7R_067 | UNCG variation | ||
| HL_7P7R_068 | No text annotation | ||
| HL_7P7R_069 | GNRA | ||
| HL_7P7R_108 | No text annotation | ||
| HL_7P7R_070 | No text annotation | ||
| HL_7P7R_071 | Mini UNCG | ||
| HL_7P7R_072 | No text annotation | ||
| HL_7P7R_073 | tRNA anticodon loop | ||
| HL_7P7R_074 | T-loop with 2 stacked bulged bases | ||
| HL_7P7R_075 | No text annotation | ||
| HL_7P7R_076 | No text annotation | ||
| HL_7P7R_077 | GNRA | ||
| HL_7P7R_078 | GNRA variation | ||
| HL_7P7R_079 | GNRA related | ||
| HL_7P7R_080 | GNRA | ||
| HL_7P7R_081 | No text annotation | ||
| HL_7P7R_082 | UNCG | ||
| HL_7P7R_083 | GNRA | ||
| HL_7P7R_084 | UNCG | ||
| HL_7P7R_085 | No text annotation | ||
| HL_7P7R_086 | No text annotation | ||
| HL_7P7R_087 | GNRA-like with tWH | ||
| HL_7P7R_088 | No text annotation | ||
| HL_7P7R_089 | GNRA | ||
| HL_7P7R_090 | No text annotation | ||
| HL_7P7R_091 | GNRA | ||
| HL_7P7R_092 | GNRA | ||
| HL_7P7R_093 | GNRA | ||
| HL_7P7R_094 | No text annotation | ||
| HL_7P7R_095 | GNRA | ||
| HL_7P7R_096 | No text annotation | ||
| HL_7P7R_097 | GNRA | ||
| HL_7P7R_098 | T-loop related | ||
| HL_7P7R_099 | No text annotation | ||
| HL_7P7R_100 | GNRA | ||
| HL_7P7R_101 | GNRA | ||
| HL_7P7R_102 | T-loop with 3 stacked bulged bases | ||
| HL_7P7R_103 | No text annotation | ||
| HL_7P7R_104 | No text annotation | ||
| HL_7P7R_105 | GNRA |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_7P7R_001 | Triple sheared with non-canonical cWW | ||
| IL_7P7R_002 | Single bulged A | ||
| IL_7P7R_003 | Minor groove platform | ||
| IL_7P7R_183 | No text annotation | ||
| IL_7P7R_004 | Kink-turn | ||
| IL_7P7R_005 | Tandem non-canonical cWW pairs | ||
| IL_7P7R_006 | Single stack bend | ||
| IL_7P7R_007 | 9x8 Sarcin-Ricin; G-bulge | ||
| IL_7P7R_008 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_7P7R_009 | Major groove minor groove platform; mini C-loop | ||
| IL_7P7R_010 | No text annotation | ||
| IL_7P7R_011 | Single bulged A | ||
| IL_7P7R_012 | Single bulged C | ||
| IL_7P7R_013 | No text annotation | ||
| IL_7P7R_014 | Isolated non-canonical cWW pair | ||
| IL_7P7R_015 | No text annotation | ||
| IL_7P7R_016 | Double sheared | ||
| IL_7P7R_017 | Isolated non-canonical cWW pair | ||
| IL_7P7R_018 | AAA cross-strand stack | ||
| IL_7P7R_019 | No text annotation | ||
| IL_7P7R_020 | tHW-tHW cross-strand stack | ||
| IL_7P7R_021 | Isolated non-canonical cWW pair | ||
| IL_7P7R_022 | Single bulged A | ||
| IL_7P7R_023 | Single bulged G | ||
| IL_7P7R_024 | Triple sheared | ||
| IL_7P7R_025 | Major groove platform | ||
| IL_7P7R_026 | Multiple bulged bases | ||
| IL_7P7R_027 | Single stack bend | ||
| IL_7P7R_028 | No text annotation | ||
| IL_7P7R_184 | No text annotation | ||
| IL_7P7R_029 | 90 degree turn | ||
| IL_7P7R_030 | Single bulged U | ||
| IL_7P7R_031 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | ||
| IL_7P7R_032 | Minor groove platform | ||
| IL_7P7R_033 | C-loop | ||
| IL_7P7R_034 | Isolated cWS basepair | ||
| IL_7P7R_035 | Double sheared with non-canonical cWW | ||
| IL_7P7R_036 | Isolated non-canonical cWW pair | ||
| IL_7P7R_037 | No text annotation | ||
| IL_7P7R_038 | Single bulged C | ||
| IL_7P7R_039 | UAA/GAN | ||
| IL_7P7R_040 | SSU/LSU pseudoknot | ||
| IL_7P7R_041 | Single bulged U | ||
| IL_7P7R_042 | Kink-turn related | ||
| IL_7P7R_043 | No text annotation | ||
| IL_7P7R_044 | Isolated non-canonical cWW pair | ||
| IL_7P7R_045 | Kink-turn | ||
| IL_7P7R_185 | No text annotation | ||
| IL_7P7R_046 | No text annotation | ||
| IL_7P7R_047 | Major groove platform with extra cWW | ||
| IL_7P7R_048 | Isolated cWS basepair | ||
| IL_7P7R_049 | Isolated cWH basepair | ||
| IL_7P7R_050 | Kink-turn | ||
| IL_7P7R_051 | Intercalated cWW | ||
| IL_7P7R_052 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_7P7R_053 | Major groove platform; stack outside cWW | ||
| IL_7P7R_054 | Major groove minor groove platform with tHH | ||
| IL_7P7R_055 | UAA/GAN | ||
| IL_7P7R_056 | tSH-tWH-tHS | ||
| IL_7P7R_057 | No text annotation | ||
| IL_7P7R_058 | Other IL | ||
| IL_7P7R_059 | No text annotation | ||
| IL_7P7R_060 | tSH-tHW | ||
| IL_7P7R_061 | No text annotation | ||
| IL_7P7R_062 | Double sheared | ||
| IL_7P7R_063 | No text annotation | ||
| IL_7P7R_064 | No text annotation | ||
| IL_7P7R_065 | Isolated tWW turn | ||
| IL_7P7R_066 | Major groove platform; stack outside cWW | ||
| IL_7P7R_186 | No text annotation | ||
| IL_7P7R_067 | Intercalated tWH | ||
| IL_7P7R_068 | tSH-tSH-tHH-tHS | ||
| IL_7P7R_069 | Single bulged A | ||
| IL_7P7R_070 | Kink-turn related | ||
| IL_7P7R_071 | Minor groove platform, major groove intercalation | ||
| IL_7P7R_072 | Major groove intercalation | ||
| IL_7P7R_073 | Major groove minor groove platform; mini C-loop | ||
| IL_7P7R_074 | UAA/GAN with extra stack | ||
| IL_7P7R_075 | Triple sheared | ||
| IL_7P7R_076 | UAA/GAN related | ||
| IL_7P7R_077 | Bulged stacked bases | ||
| IL_7P7R_078 | No text annotation | ||
| IL_7P7R_079 | Major groove platform | ||
| IL_7P7R_080 | No text annotation | ||
| IL_7P7R_081 | Single bulged U | ||
| IL_7P7R_082 | Minor groove platform | ||
| IL_7P7R_083 | Isolated tHS basepair with bulges | ||
| IL_7P7R_084 | Isolated non-canonical cWW pair | ||
| IL_7P7R_085 | Isolated non-canonical cWW pair | ||
| IL_7P7R_086 | Isolated non-canonical cWW pair | ||
| IL_7P7R_087 | No text annotation | ||
| IL_7P7R_088 | No text annotation | ||
| IL_7P7R_089 | No text annotation | ||
| IL_7P7R_090 | Single bulged G | ||
| IL_7P7R_091 | Isolated tHS basepair with bulges | ||
| IL_7P7R_092 | Double sheared | ||
| IL_7P7R_093 | Single bulged U | ||
| IL_7P7R_094 | Single stack bend | ||
| IL_7P7R_095 | Major groove platform | ||
| IL_7P7R_096 | Major groove platform | ||
| IL_7P7R_097 | Major groove minor groove platform with extra cWW | ||
| IL_7P7R_098 | Double sheared with non-canonical cWW | ||
| IL_7P7R_099 | Major groove platform | ||
| IL_7P7R_100 | Isolated non-canonical cWW with bulges | ||
| IL_7P7R_101 | Multiple bulged bases | ||
| IL_7P7R_102 | Major groove platform with intercalation | ||
| IL_7P7R_103 | Single bulged A | ||
| IL_7P7R_104 | tSH-tHS-tHW | ||
| IL_7P7R_105 | Sarcin-Ricin target in LSU H95; G-bulge | ||
| IL_7P7R_106 | C-loop | ||
| IL_7P7R_107 | UAA/GAN related, with intercalation | ||
| IL_7P7R_108 | Multiple bulged bases | ||
| IL_7P7R_109 | UAA/GAN with extra cWW | ||
| IL_7P7R_110 | Major groove intercalation | ||
| IL_7P7R_111 | No text annotation | ||
| IL_7P7R_112 | tHS double platform | ||
| IL_7P7R_113 | Major groove intercalation | ||
| IL_7P7R_114 | No text annotation | ||
| IL_7P7R_115 | Major groove minor groove platform; mini C-loop | ||
| IL_7P7R_116 | Symmetric double minor groove platform | ||
| IL_7P7R_117 | Bacterial 5S Loop E | ||
| IL_7P7R_118 | Single bulged G | ||
| IL_7P7R_119 | Single bulged A | ||
| IL_7P7R_120 | No text annotation | ||
| IL_7P7R_121 | Minor groove platform | ||
| IL_7P7R_122 | Multiple bulged bases | ||
| IL_7P7R_187 | No text annotation | ||
| IL_7P7R_123 | Tandem non-canonical cWW pairs | ||
| IL_7P7R_124 | Multiple bulged bases | ||
| IL_7P7R_125 | Minor groove platform related | ||
| IL_7P7R_126 | Isolated cWH basepair | ||
| IL_7P7R_127 | tWH-tWH-tHW-tHW | ||
| IL_7P7R_128 | Kink-turn with non-sequential stacking | ||
| IL_7P7R_129 | No text annotation | ||
| IL_7P7R_130 | C-loop | ||
| IL_7P7R_131 | Single bulged U | ||
| IL_7P7R_132 | C-loop | ||
| IL_7P7R_133 | Single bulged G | ||
| IL_7P7R_134 | No text annotation | ||
| IL_7P7R_135 | 6x5 Sarcin-Ricin; G-bulge | ||
| IL_7P7R_136 | No text annotation | ||
| IL_7P7R_137 | SSU/LSU pseudoknot | ||
| IL_7P7R_138 | Kink-turn related | ||
| IL_7P7R_139 | No text annotation | ||
| IL_7P7R_140 | tSH-tWH-tHS | ||
| IL_7P7R_141 | Major groove platform | ||
| IL_7P7R_142 | Major groove minor groove platform; mini C-loop | ||
| IL_7P7R_143 | Single bulged U | ||
| IL_7P7R_144 | No text annotation | ||
| IL_7P7R_145 | Major groove platform; stack outside cWW | ||
| IL_7P7R_146 | Major groove platform | ||
| IL_7P7R_147 | Tandem non-canonical cWW pairs | ||
| IL_7P7R_188 | Triple non-canonical cWW pairs | ||
| IL_7P7R_148 | No text annotation | ||
| IL_7P7R_149 | Kink-turn | ||
| IL_7P7R_150 | Left turn | ||
| IL_7P7R_151 | tSH-tWH-tHS | ||
| IL_7P7R_152 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | ||
| IL_7P7R_153 | Single bulged A | ||
| IL_7P7R_154 | Single bulged G | ||
| IL_7P7R_155 | Minor groove platform | ||
| IL_7P7R_156 | No text annotation | ||
| IL_7P7R_157 | Minor groove platform | ||
| IL_7P7R_158 | Single stack bend | ||
| IL_7P7R_159 | No text annotation | ||
| IL_7P7R_160 | Single bulged U | ||
| IL_7P7R_161 | Isolated cWS basepair | ||
| IL_7P7R_162 | Minor groove platform | ||
| IL_7P7R_163 | Single bulged A | ||
| IL_7P7R_164 | Isolated non-canonical cWW pair | ||
| IL_7P7R_165 | Minor groove platform | ||
| IL_7P7R_166 | Minor groove platform | ||
| IL_7P7R_167 | No text annotation | ||
| IL_7P7R_168 | No text annotation | ||
| IL_7P7R_169 | 180 degree turn | ||
| IL_7P7R_170 | Tandem non-canonical cWW pairs | ||
| IL_7P7R_171 | No text annotation | ||
| IL_7P7R_172 | No text annotation | ||
| IL_7P7R_173 | No text annotation | ||
| IL_7P7R_174 | Isolated non-canonical cWW pair | ||
| IL_7P7R_175 | Decoding loop related | ||
| IL_7P7R_176 | Isolated non-canonical cWW pair | ||
| IL_7P7R_177 | Double sheared | ||
| IL_7P7R_178 | Tandem non-canonical cWW pairs | ||
| IL_7P7R_179 | Triple sheared related | ||
| IL_7P7R_180 | Isolated non-canonical cWW pair | ||
| IL_7P7R_181 | Isolated tHS basepair with bulges | ||
| IL_7P7R_182 | No text annotation |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_7P7R_001 | No text annotation | ||
| J3_7P7R_029 | No text annotation | ||
| J3_7P7R_030 | No text annotation | ||
| J3_7P7R_002 | No text annotation | ||
| J3_7P7R_003 | No text annotation | ||
| J3_7P7R_031 | No text annotation | ||
| J3_7P7R_004 | No text annotation | ||
| J3_7P7R_005 | No text annotation | ||
| J3_7P7R_006 | No text annotation | ||
| J3_7P7R_007 | No text annotation | ||
| J3_7P7R_008 | No text annotation | ||
| J3_7P7R_032 | No text annotation | ||
| J3_7P7R_009 | No text annotation | ||
| J3_7P7R_033 | No text annotation | ||
| J3_7P7R_010 | No text annotation | ||
| J3_7P7R_034 | No text annotation | ||
| J3_7P7R_011 | No text annotation | ||
| J3_7P7R_012 | No text annotation | ||
| J3_7P7R_013 | No text annotation | ||
| J3_7P7R_014 | No text annotation | ||
| J3_7P7R_015 | No text annotation | ||
| J3_7P7R_016 | No text annotation | ||
| J3_7P7R_035 | No text annotation | ||
| J3_7P7R_017 | No text annotation | ||
| J3_7P7R_036 | No text annotation | ||
| J3_7P7R_018 | No text annotation | ||
| J3_7P7R_019 | No text annotation | ||
| J3_7P7R_020 | No text annotation | ||
| J3_7P7R_021 | No text annotation | ||
| J3_7P7R_022 | No text annotation | ||
| J3_7P7R_023 | No text annotation | ||
| J3_7P7R_037 | No text annotation | ||
| J3_7P7R_024 | No text annotation | ||
| J3_7P7R_038 | No text annotation | ||
| J3_7P7R_025 | No text annotation | ||
| J3_7P7R_039 | No text annotation | ||
| J3_7P7R_026 | No text annotation | ||
| J3_7P7R_027 | No text annotation | ||
| J3_7P7R_040 | No text annotation | ||
| J3_7P7R_028 | No text annotation | ||
| J4_7P7R_001 | No text annotation | ||
| J4_7P7R_002 | No text annotation | ||
| J4_7P7R_003 | No text annotation | ||
| J4_7P7R_004 | No text annotation | ||
| J4_7P7R_005 | No text annotation | ||
| J4_7P7R_006 | No text annotation | ||
| J4_7P7R_007 | No text annotation | ||
| J4_7P7R_008 | No text annotation | ||
| J4_7P7R_009 | No text annotation | ||
| J4_7P7R_010 | No text annotation | ||
| J4_7P7R_011 | No text annotation | ||
| J4_7P7R_012 | tRNA junction | ||
| J4_7P7R_013 | No text annotation | ||
| J4_7P7R_016 | No text annotation | ||
| J4_7P7R_014 | No text annotation | ||
| J4_7P7R_015 | No text annotation | ||
| J5_7P7R_001 | No text annotation | ||
| J5_7P7R_002 | No text annotation | ||
| J5_7P7R_003 | No text annotation | ||
| J5_7P7R_004 | No text annotation | ||
| J5_7P7R_005 | No text annotation | ||
| J5_7P7R_006 | No text annotation | ||
| J5_7P7R_007 | No text annotation | ||
| J5_7P7R_008 | No text annotation | ||
| J5_7P7R_009 | No text annotation | ||
| J6_7P7R_001 | No text annotation | ||
| J6_7P7R_002 | No text annotation | ||
| J7_7P7R_001 | No text annotation | ||
| J7_7P7R_002 | No text annotation |
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