IL_7P7R_070

3D structure

PDB id

7P7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

PoxtA-EQ2 antibiotic resistance ABCF bound to E. faecalis 70S ribosome, state I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGCAAAA*UGAAGUAUA

Length

16 nucleotides

Bulged bases

7P7R|1|A|A|1814, 7P7R|1|A|A|1829, 7P7R|1|A|U|1833

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7P7R_070 not in the Motif Atlas

Homologous match to IL_7RQB_070

Geometric discrepancy: 0.0855

The information below is about IL_7RQB_070

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.3

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

7P7R|1|A|U|1811
7P7R|1|A|G|1812
7P7R|1|A|C|1813
7P7R|1|A|A|1814
7P7R|1|A|A|1815
7P7R|1|A|A|1816
7P7R|1|A|A|1817
*
7P7R|1|A|U|1826
7P7R|1|A|G|1827
7P7R|1|A|A|1828
7P7R|1|A|A|1829
7P7R|1|A|G|1830
7P7R|1|A|U|1831
7P7R|1|A|A|1832
7P7R|1|A|U|1833
7P7R|1|A|A|1834

Current chains

Chain A

23S rRNA

Nearby chains

Chain G

50S ribosomal protein L2

Chain a

Small subunit ribosomal RNA; SSU rRNA