IL_7P7U_054

3D structure

PDB id

7P7U (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. faecalis 70S ribosome with P-tRNA, state IV

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAAG*CGC

Length

8 nucleotides

Bulged bases

7P7U|1|A|G|1367

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7P7U_054 not in the Motif Atlas

Homologous match to IL_4WF9_050

Geometric discrepancy: 0.1906

The information below is about IL_4WF9_050

Detailed Annotation

Major groove minor groove platform with tHH

Broad Annotation

No text annotation

Motif group

IL_06671.2

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

11

Unit IDs

7P7U|1|A|G|1354
7P7U|1|A|G|1355
7P7U|1|A|A|1356
7P7U|1|A|A|1357
7P7U|1|A|G|1358
*
7P7U|1|A|C|1366
7P7U|1|A|G|1367
7P7U|1|A|C|1368

Current chains

Chain A

23S rRNA

Nearby chains

Chain V

50S ribosomal protein L22