IL_7PD3_003
3D structure
- PDB id
- 7PD3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the human mitoribosomal large subunit in complex with NSUN4.MTERF4.GTPBP7 and MALSU1.L0R8F8.mt-ACP
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- AAAGUAUA*UAGAAAU
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7PD3_003 not in the Motif Atlas
- Geometric match to IL_4V9F_012
- Geometric discrepancy: 0.2693
- The information below is about IL_4V9F_012
- Detailed Annotation
- 8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_59724.1
- Basepair signature
- cWW-L-R-L-R-cSH-tWH-tHS-R-L-cWW
- Number of instances in this motif group
- 1
Unit IDs
7PD3|1|A|A|1739
7PD3|1|A|A|1740
7PD3|1|A|A|1741
7PD3|1|A|G|1742
7PD3|1|A|U|1743
7PD3|1|A|A|1744
7PD3|1|A|U|1745
7PD3|1|A|A|1746
*
7PD3|1|A|U|1752
7PD3|1|A|A|1753
7PD3|1|A|G|1754
7PD3|1|A|A|1755
7PD3|1|A|A|1756
7PD3|1|A|A|1757
7PD3|1|A|U|1758
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain 3
- 39S ribosomal protein L35, mitochondrial
- Chain H
- 39S ribosomal protein L9, mitochondrial
- Chain M
- 39S ribosomal protein L15, mitochondrial
- Chain X
- 39S ribosomal protein L28, mitochondrial
- Chain i
- 39S ribosomal protein L51, mitochondrial
- Chain q
- Growth arrest and DNA damage-inducible proteins-interacting protein 1
Coloring options: