IL_7PHC_049

3D structure

PDB id

7PHC (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with A*- and P/E-site tRNAs in chloramphenicol-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

9.9 Å

Loop

Sequence

CUGAGG*CGUAGG

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PHC_049 not in the Motif Atlas

Geometric match to IL_8ZA4_001

Geometric discrepancy: 0.3189

The information below is about IL_8ZA4_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_76308.6

Basepair signature

cWW-tSH-tHW-tHS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

7PHC|1|3|C|1384
7PHC|1|3|U|1385
7PHC|1|3|G|1386
7PHC|1|3|A|1387
7PHC|1|3|G|1388
7PHC|1|3|G|1389
*
7PHC|1|3|C|1398
7PHC|1|3|G|1399
7PHC|1|3|U|1400
7PHC|1|3|A|1401
7PHC|1|3|G|1402
7PHC|1|3|G|1403

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain 0

50S ribosomal protein L34

Chain a

50S ribosomal protein L2

Chain v

50S ribosomal protein L28