IL_7PHC_053

3D structure

PDB id

7PHC (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with A*- and P/E-site tRNAs in chloramphenicol-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

9.9 Å

Loop

Sequence

UAAGG*UUGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PHC_053 not in the Motif Atlas

Geometric match to IL_5J7L_274

Geometric discrepancy: 0.3217

The information below is about IL_5J7L_274

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

7PHC|1|3|U|1501
7PHC|1|3|A|1502
7PHC|1|3|A|1503
7PHC|1|3|G|1504
7PHC|1|3|G|1505
*
7PHC|1|3|U|1538
7PHC|1|3|U|1539
7PHC|1|3|G|1540
7PHC|1|3|A|1541
7PHC|1|3|G|1542

Current chains

Chain 3

23S ribosomal RNA

Nearby chains