IL_7PHC_075

3D structure

PDB id

7PHC (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with A*- and P/E-site tRNAs in chloramphenicol-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

9.9 Å

Loop

Sequence

UAG*UGGG

Length

7 nucleotides

Bulged bases

7PHC|1|3|G|2246

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PHC_075 not in the Motif Atlas

Geometric match to IL_5J7L_325

Geometric discrepancy: 0.1706

The information below is about IL_5J7L_325

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_85599.2

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

9

Unit IDs

7PHC|1|3|U|2088
7PHC|1|3|A|2089
7PHC|1|3|G|2090
*
7PHC|1|3|U|2244
7PHC|1|3|G|2245
7PHC|1|3|G|2246
7PHC|1|3|G|2247

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain a

50S ribosomal protein L2

Chain v

50S ribosomal protein L28